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Ancient Algae Reveal Secrets of Plant Evolution
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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When “The Blob” Made It Hotter Under the Water
… samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … nutrient flux in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Those similarities, based on their ratios of small DNA sequence fragments called tetranucleotides, are a way to …
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Supercharging SIP in the Fungal Hyphosphere
… at a larger scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their … simultaneously. Soil microorganisms play a critical role in sequestering carbon and mitigating greenhouse gas emissions, … HT-SIP is a capability available to request through  the JGI proposal calls . …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… Cone Pool in Mono County, California, scientists have used sequencing methods for the first time to comprehensively … more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, postdoctoral … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … approach for giant virus genomic discovery.  In 2020, a JGI-led team used this approach to deliver novel viral …
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W. Berkeley Kauffman
… utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Neha Varghese
… and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Atif Shahab
… led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform … tracking, and enables efficient analysis and reporting of sequencing projects and their status. Mr. Shahab has …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata …
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