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The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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DOE Metrics
… hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators … hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … right, got it. And just thinking about it from I know the JGI perspective here at the Joint Genome Institute, because … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … system. For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense …
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Disclaimer
… statement of authorship are reproduced on all copies. The JGI is not responsible for the contents of any off-site …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible … sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Data Policy & Support
… Data Management at the JGI … JGI Scientist Code of Conduct …
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JGI at the AGU Fall Meeting
… on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential … A finely tuned, time-resolved analysis of viral and microbial communities in the Erpe river” 8:30am Convention … continental-scale context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” …
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Fungal & Algal Program
… Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … The program also explores microeukaryotic members of microbial communities, cataloging gene markers, and … an international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a …
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An Earth Month Look at Sustainability Efforts at the JGI
… a DIY Succulent Workshop and Plant Sale. All year, the JGI helps support finding solutions to clean energy and environmental challenges. And many JGIers work to connect those big goals with their everyday … of that lifecycle, there’s a specific push going on at the JGI — the ZERO Waste Initiative — that works to prepare the …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of … The JGI's DNA Synthesis Science Group supports researchers … The JGI has developed a suite of build-optimization software … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related …
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Webinar: SIP technologies at EMSL and JGI
… Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage … compounds. During this webinar, EMSL’s Mary Lipton and the JGI’s Rex Malmstrom provided background on the various … don’t have a great way to resolve root respiration from microbial processes, but we’re not mixing the tracer with …
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