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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge … The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted … proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and … and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis …
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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Webinar: SIP technologies at EMSL and JGI
… Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage … compounds. During this webinar, EMSL’s Mary Lipton and the JGI’s Rex Malmstrom provided background on the various … with. 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? A: It takes a few …
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Natural Prodcast Episode 4: Nancy Keller
… I didn’t really think about it a lot. And so after I was finished with the Peace Corps, I decided I wanted to go into … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, … actually, everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – …
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Natural Prodcast Episode 14: Nigel Mouncey
… and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk about JGI’s vision for secondary metabolism, his past in industry … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … to engage the community to inform necessary changes to JGI data policies. Since completion of the HGP, the JGI has …
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Fungal & Algal Program
… an international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data access, visualization, and analysis tools for …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … and environmental challenges. In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described … The next year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or … days on this. So we are right now-- we have just recently finished the synthesis of the first set of these molecules …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … is challenging and often results in highly fragmented data, which limits the ability of researchers to accurately …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was …
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