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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Streamlining Regulon Identification in Bacteria
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi Otani. Both are members of the JGI’s Secondary Metabolite Science Program, which Mouncey …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of … with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … Streptomyces species or related microbes can work with the JGI to apply the same integrated approach to unlock useful …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data …
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Mapping Heat Resistance in Yeasts
… Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence … grew well; the survivors had their DNA sequenced at the JGI as part of a 2014 Community Science Program project. The …
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The Power of One, Amplified
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was performed by Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly … amplified, then sequenced and assembled. Robert Bowers , a JGI scientist within the Microbial Program, led the genomic …
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Busting the Unbreakable Lignin
… Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University … (gene expression), and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome … team had previously identified and characterized, also with JGI’s help. Additionally, the Marsarchaeota comprise 20-50 …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community …
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Making a Lichen Together
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available …
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How Maize Makes An Antibiotic Cocktail
… as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … by a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a …
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