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… gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, José F. Martínez, Anna … a bacterial population." Nature genetics 49, no. 8 (2017): 1282-1285. Luke, Chung Sze, Jangir Selimkhanov, Leo … Education …

… products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen … mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani H, de Raad M, … Sciences and Chemical Engineering.  DOI: 10.1016/b978-0-12-409547-2.14834-6 4. Roth MS, Gallaher SD, Westcott …

… library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). … of biological complexity with NFsim. Nature Methods 8, 177–183 (2011).  … Education …

… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity and activity is … a high-altitude watershed soil ecosystem. Microbiome 11, 237 Roux et al., 2023. iPHoP: An integrated machine learning …

… soil microbiome diversity and function.  Nature Microbiol. 7(9):1419-1430. Ye et al (2022) The role of zinc in the … evolution of polar phytoplankton.  Nature Ecol Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal … Education …

… of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative … metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a semi-automated … to unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active …

… dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of … diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 … viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the …

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… and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus Area (SFA).  … heme-binding split-barrel family. J Biol Chem  300(11), 107888. Grosjean N, Yee EF, Kumaran D, Chopra K, Abernathy M, … to carbon metabolism in cyanobacteria. Nature Comm 15:3167. Hammack AT, Blaby-Haas CE. (2024) Machine learning sheds …

… training fellowship in biomolecular and optical devices 1997: NSF Interdisciplinary research experience for … T., Rübel, O., Keasling, J., Northen, T., & Bowen, B. (2017). OpenMSI Arrayed Analysis Toolkit: analyzing spatially … using CUR matrix decompositions. Analytical chemistry, 87(9), 4658–4666. Wang, Y., Kora, G., Bowen, B., & Pan, C. …

… Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer … Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and … Education …

… metagenomics. Nature Reviews Microbiology 20: 721 Volland, J.-M. et al. 2022. A centimeter-long bacterium … at the interface of simple and complex life. Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of … and host interactions through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and …