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Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones
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DOE Metrics
… 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% 2,160 2,112 99.8% Q3 2026 175     2,164     Q4 2026 175     2,208   … 1,144.186 163% 8,585 8,640 100.6% Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 … % Goal   FY 2024 Total   650.0 870.574 134% 8,784 8,688 101.2% Q1 2024 162.5 197.381 121% 2,164 2,112 97.6% Q2 2024 …
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Events
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … photosystem to unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on …
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Fungus Fuels Tree Growth
… States Department of Energy under contract DE-AC02-05CH11231. Support was also provided by the NSF Zygolife … on the Biology of Tree and Forest Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI Community sequencing program project …
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JGI Portals
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Microbiome Data Science Team
… the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Finding the Fermenters
… National Institute of Food and Agriculture grant 2018-67015-27495, the United States Department of Agriculture … National Institute of Food and Agriculture grant 1019985, and the University of California, Davis Small Grant … Narrative for Porphyromonadaceae sp. W3.11 genome on KBase …
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Mapping Heat Resistance in Yeasts
… to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a team led by researchers at the … survivors had their DNA sequenced at the JGI as part of a 2014 Community Science Program project. The results revealed … the US Department of Energy under contract no. DE-AC02-05CH11231. The work was supported by R01 GM120430-A1. …
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