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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started … staff gathered at the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as representatives highlighted the benefits of this collaboration.  JGI Director Nigel Mouncey reflected on how the JGI-UC …
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Ian Blaby
… biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … with a view to developing a deeper understanding of sequence-based gene function. … Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, … et. al. 2017 Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. Plant Journal …
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A Plant Root Atlas for Tracking Developmental Trajectories
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader … perspective:  “ This exciting work is well aligned with the JGI’s growing efforts in establishing plant and fungal …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … to climate adaptation and range expansion. This would subsequently represent a valuable breeding resource for …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) … user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the … be measured by IR-spectroscopy and mass spectrometry in sequence in real time at an atomic resolution. We are …
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Leo Baumgart
… at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … production workflows. He developed and scaled the multiDAP-seq assay, a method that enables high-throughput … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … August 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …
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Tracking the Origins of Methane-Producing Microbes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 … archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the Emerging …
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