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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Jonelle Basso, Heejung Cho Project:  Characterizing how resident phages shape their host phenotype Graduate …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… M. polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green … mechanisms they had identified. For example, in comparing how liverwort and flowering plants had adapted to their … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of …
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Tanja Woyke
… 2018-2023 Highly Cited Researcher, Biology and Biochemistry, top 1%, … for Ocean Sciences Single Cell Genomics Center (2013-current) Science Advisory Board Member for Science … in metabolically active, membrane-bound organelles. Science 376:1453 Schulz et al. 2022. Giant virus biology and …
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Three Join the JGI User Executive Committee
… for the Ecological Society of America. He’s interested in how microbes influence biogeochemical cycles in soils and … Greenham stepped down at the end of her term. In late 2023, the JGI launched a solicitation for nominations for three …
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Statement on the Use of Genomics Data
… and reinforced by the  Fort Lauderdale Agreement (2003), the JGI recognized the need to engage the community to … current data policies for gaining a better understanding of how changes may affect data-producing users and other users. …
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Learning to Look
… By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 … replication and integration. The researchers also learned how an inovirus’ strategy of integrating itself within a … to avoid CRISPR-Cas immunity. In addition, Borges also showed that inoviruses might prevent new phages from …
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Products
… change etc) and structural rearrangements, alignment files 384/454 Fungal Transcriptome RNA for expression profiling … sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical …
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The JGI Data Portal: Improving User Experience
… areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. … for various data types or taxa An at-a-glance view of how much data you’ve selected for download, as well as …
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Building Sphagnum Genomic Resources
… Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond to increases in … carbon is stored in peatlands, which make up nearly 3 percent of the earth’s land surface. In the New … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. For the sphagnome project, germplasm establishment and …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … from different ecosystems all over the world, including 3,908 isolate reference DNA viruses and 264,413 … already doing what you want in a sense, and can inform on how this can be done” Roux said. And in just 6 years, IMG/VR …
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Streamlining Regulon Identification in Bacteria
… (Berkeley Lab). Transcription factors control when and how genes are turned on or off, so transcriptional … including activators, repressors and sigma factors. However, currently the process for identifying the … 18, with the number of factor-gene pairs almost doubling to 399. Two of the 11 sigma factors addressed in the study were …
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Soil virus offers insight into maintaining microorganisms
… is tied to carbon cycling and plays an important role in how carbon is processed and cycled in soils. Ultimately, … was performed on a project award ( https://doi.org/10.46936/cpcy.proj.2021.60161/60000437 ) under the FICUS program to JEM and used resources at …
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