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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but currently require input in the ~ 30 – 100ng range. Note that beyond quantity, input quality (i.e., …
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DAS Tool for Genome Reconstruction from Metagenomes
… of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving … (CAMI) Challenge, a competition launched in 2015 by a community initiative, with varying numbers of … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Support was provided by the DOE and the National …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to … Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development …
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Cultivating Symbiotic Antarctic Microbes
… to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, … outlined by JGI scientists and their collaborators in 2013. While most DPANN lineages are predicted symbionts, the … the US Department of Energy under contract no. DE-AC02-05CH11231. S.E. was supported by the EMBO Long-Term Fellowship …
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A Grass Model to Help Improve Giant Miscanthus
… and Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. …
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JGI@25: Strengthening Soybean
… of fuel per acre to compete with gasoline. Yet.  In 2010, soybean became the first legume species with a published … of Missouri said he and his colleagues had identified 1,110 genes involved in lipid metabolism.  “There’s still a …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … Those from the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… of conifer needle microbiomes across six sites spanning a 1000km section of the Rocky Mountains. This represents the … by the National Science Foundation (NSF) under grant DEB-1442348. The work (proposal:  … of Energy operated under Contract No. DE-AC02-05CH11231. …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported … Department of Energy operated under Contract No. DE-AC02-05CH11231. …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 … Lawrence , the first graduate student intern from the 2014 cohort. After working on his post-doctoral position with … helped her in her role at the Lab as well.  One of the 2015 program alumnus Cristhian Gutierrez discussed how his …
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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. … what is still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much …
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