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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… year-over-year on marginal soil and with few resources. Despite the low maintenance, it can produce an impressive … genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study , … types of naturally occurring switchgrass, those with 4 copies of the genome (4X) and those with eight copies (8X). …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
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JGI@25: Following Fungi that Pry Apart Plant Polymers
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… Lead at the JGI.  To understand the microbiome systems underpinning a broad range of environmental challenges, … in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged metagenomics … understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… comprised of holding JGI-internal leadership and planning workshops, as well as collecting extensive input from all … the JGI’s expertise to grow in areas such as developing pathogen-agnostic detection and prediction strategies …
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Boosting Small Molecule Production in Super “Soup”
… of 0.9 grams per Liter-hour in a system optimized for developing small-scale prototypes. Additionally, the team also … through this technology.” “This is a fantastic example of rapid-prototyping systems for metabolic pathways that we plan to offer to …
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Training the Next Generation of Talent
… worked with Nicole Johnson in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a … conducts cancer research. Lawrence’s project had him developing a framework that would allow users to simultaneously … he also took a long view of the opportunity. “I’m getting a picture of the amount of data that’s going to be generated …
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Boosting Small Molecule Production in Super “Soup”
… of 0.9 grams per Liter-hour in a system optimized for developing small-scale prototypes. Additionally, the team also … through this technology.” “This is a fantastic example of rapid-prototyping systems for metabolic pathways that we plan to offer to …
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Silver age of GOLD introduces new features
… recent improvements include new features like a public API and ecosystem landing page, as well as the growth of …
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Making a Lichen Together
… fixed carbon to the mycobiont. However, despite a century-and-a-half of lichen research, many of the … lichens are dominant carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their … alga has all the genes needed for meiosis, and thus can rapidly create genetic variation in its progeny. The study’s …
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A User-Centered Approach to Accessing JGI Data
… files’ more easily.” He also elaborated on the following topics. Q(uestion): What is the Data Portal’s scope? A(nswer): … We have reached out to KBase regarding use of our search API. They have expressed an interest in using this to find …
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