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Webinar: PhycoCosm Tutorial
… data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI … now – large scale CSP and FICUS with March 24 and March 17 deadlines. 25-30% of proposals are selected, pretty high …
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Team Science Reveals Important Protein in Poplar
… (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant growth, lignin … as nutrient-poor land, drought and disease.  Summary In the 1970s, the DOE  targeted poplar as its primary wood crop for … of Energy, operated under Contract No. DE-AC02-05CH11231. Flavonoid and lignin analysis was partially supported …
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How Filamentous Fungi Sense Food
… tree of life, enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was … the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous … under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program …
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Accelerating Metagenomics Discoveries with Deep Learning
… is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in …
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A One-Stop Shop for Analyzing Algal Genomes
… allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? … scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting … inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many sequenced by the JGI — so …
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The fungus that made itself at home
… to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Mapping the Earth’s Hidden Fungal Kingdom
… and yeasts, outnumber their ancient relatives by nearly 10 to one in sequenced collections. Yet the early-diverging … for the next generation of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic … genomic features alone. In one major project analyzing over 1,000 yeast genomes, machine learning identified specific …
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Defining a Pan-Genome for Antarctic Archaea
… in Antarctic lakes, some of which have salinities 10 times that of seawater. To shed light on the global … of Halorubrum lacusprofundi from Deep Lake and Rauer 1 Lake, one of the lakes in the nearby Rauer Islands. … the US Department of Energy under contract no. DE-AC02-05CH11231. S.E. was supported by the EMBO Long-Term Fellowship …
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Building Sphagnum Genomic Resources
… of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. For the sphagnome project, germplasm establishment …
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Understanding Wildfire Recovery, Starting in Soil
… This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed … Research and operated under contract number DE-AC05-76RL01830. Metagenomic and metatranscriptomic sequencing … the US Department of Energy under Contract No. DE-AC02-05CH11231. …
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JGI at the AGU Fall Meeting
… (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in … User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, … in Sacramento-San Joaquin Delta, California” December 14 8:05am Convention Center, Rm 231-232: Josue Rodriguez-Ramos, …
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Mindfully Moving JGI
… to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the … after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a …
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