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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Yao. ] ] The JGI welcomed 14 scientists selected for our 2026 Community Science Program Large Scale call. This … global research community. See below for the full list of 2026 CSP Large Scale Call recipients.    …
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A Collaboration to Improve Plant Genome Annotations Across Species
… plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … we are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is an …
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Supporting Global Research into Actinomycetes
… Streptomyces is more than just a funny word. The 500 species described within the group are responsible for …
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Calculating the Costs of Multiple Switchgrass Gene Copies
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv … Using this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … to plan but unbeknownst to Ray and most of the rest of the 200-plus Zoom participants. While the virtual mic shifted to …
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Evolution of a Fungal Gene Expression Regulator
… the fungal tree of life to date, involving more than 500 species of fungi. The Impact Interactions between plants … least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of … of life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering …
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Tracking the Origins of Methane-Producing Microbes
… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the … three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); … that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated with … out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in … as a barcode to sift out virus fragments, reconstructing 2,074 genomes of large and giant viruses. More than 50,000 …
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Training the Next Generation of Talent
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JGI Accepts 17 Proposals for Community Science Program
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Webinar: PhycoCosm Tutorial
… to be changed, please contact us and we’ll work work it out 2.  Q(uestion): Do you publish the data sets the trees are … on, there are 7 genomes on NCBI but your portal has only 2 of them. A: Watch the video (above) for the answer … are open right now – large scale CSP and FICUS with March 24 and March 17 deadlines. 25-30% of proposals are selected, …
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