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VEGA Symposium
… JGI Organizers … Jasmine Bunn , JGI Administrative Support …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary … various bioinformatic tools and comprehensive curated databases, including nomenclatural and genomic information …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all … Deputy of Operations provides oversight and leadership of JGI operations infrastructure, including space and …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly available data, … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein … soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Supporting Global Research into Actinomycetes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a … user-available API’s offer a space to not just store data, but for the community to discuss those data and make publicly-visible comments. Its purpose is to …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  … it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … Canada at Summerland BC aimed to generate whole genome data of Olpidium. This required an enormous amount of effort …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … his team then linked those species-level observations with data on microalgal communities across different ocean … from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of evidence showing …
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Viral Genomics Group
… measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question … interactions occurring in microbiomes, these omics data must be complemented with single-cell resolution assays … towards specific phages and/or hosts. To that end, the JGI Viral Genomics group is exploring different approaches …
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University of California, Merced Internship Program
… Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them …
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