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Uncovering Novel Genomes from Earth’s Microbiomes
… this work results from a collaboration involving more than 200 scientists, researchers at the U.S. Department of Energy … done the sampling, Eloe-Fadrosh reached out to more than 200 researchers around the world in accordance with the JGI … this massive dataset, Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… began as “curiosity driven research.” In the early 2000s, UC Berkeley colleague and longtime JGI collaborator …
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Expanding Virophage Diversity
… through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  … 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in Walnut Creek, Calif.  Click here and scroll …
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A Collaboration to Improve Plant Genome Annotations Across Species
… targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning … are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is an …
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Supporting Global Research into Actinomycetes
… Streptomyces is more than just a funny word. The 500 species described within the group are responsible for …
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Calculating the Costs of Multiple Switchgrass Gene Copies
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Using this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) generated …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … What will happen to Phytozome v12 URLs after August 6th? All URLs with a domain of  … . Gene pages will also be forwarded (e.g.,  Gene Potri.006G034600 on v12 will be forwarded to  Gene Report:  …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… to plan but unbeknownst to Ray and most of the rest of the 200-plus Zoom participants. While the virtual mic shifted to … of Building 310, adding the crowning piece of the entire 80,000 square foot, three-building campus at 2800 Mitchell …
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Evolution of a Fungal Gene Expression Regulator
… the fungal tree of life to date, involving more than 500 species of fungi. The Impact Interactions between plants … least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of … cytosine clusters (MCCs – similar to the MAC clusters for 6mA), rather than in genes, which suggests that 5mC may play …
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Tracking the Origins of Methane-Producing Microbes
… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the …
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