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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long bacterium …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the Department of Energy (DOE) colleagues. “At that time (1986) 98% of the human genome was thought to be junk DNA, so … Health that this effort would prove invaluable. By the mid-1990s, the sequencing efforts expanded beyond LANL to … genetics. Drell held the role until he retired in 2018. “While I never said this out loud,” Drell said, speaking …
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Gut Fungi: Unexpected Source of Novel Chemicals
… californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department … Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also …
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Virus Discoveries that Keep Getting Bigger
… large virions (700 nm in diameter) to much smaller virions (120 nm in diameter). Across the phylum  Nucleocytoviricota , … of Science User Facility, under contract no. DE-AC02–05CH11231. C.A. received funding from the European Research …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … data repositories over its now 20-plus-year history. In 2019, the countdown has begun to the June dedication event of … Maxon, Biosciences Associate Laboratory Director, of the 100-page document with over 200 actionable milestones. JGI …
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iPHoP: A Matchmaker for Phages and their Hosts
… these different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… single cell – a symbiont of the green sharpshooter. In 2012, single cells isolated from the microbes found in the oil … microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of … University of Sydney who has been at the forefront of Covid-19 research (see his  2021 VEGA talk ). A global authority on viruses, Holmes was …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … enrichment activities. For some students in the 2021 cohort, this was their first internship experience, while …
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Fishing for Novel Cellulose Degraders
… User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s …
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Mapping Heat Resistance in Yeasts
… closest relative S. paradoxus at high temperatures (39°C/102°F). The Impact One of the challenges in understanding … in energy and environment. Summary There are more than 1,000 species of yeasts and they vary in terms of genetics, … including biofuel production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome …
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