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UC Merced Interns Reflect on Their JGI Summer Projects
… past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the … about their work here in a series of videos produced by JGI Communications & Outreach intern Ashleigh Papp. The … for mentors and students alike. Tools like Slack, Google Docs, and GitHub enabled virtual collaboration. JGI also …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as … The “User” signing the JGI User Agreement will be an authorized representative from …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a … potentially for like undergrads, grad students, postdocs, for trainees sort of like we do with GNPS, the Global …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and … capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible … sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … right, got it. And just thinking about it from I know the JGI perspective here at the Joint Genome Institute, because …
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Data Policy & Support
… Data Management at the JGI … JGI Scientist Code of Conduct …
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Webinar: SIP technologies at EMSL and JGI
… Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage … compounds. During this webinar, EMSL’s Mary Lipton and the JGI’s Rex Malmstrom provided background on the various … go from start to finish, i.e., QC to separation to library sequencing and assembly. Like others, our turnaround time …
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JGI-TMF Critical Minerals and Materials Call
… of critical minerals and materials. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. All JGI data is made publicly available in accordance with the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of Energy Office of … Phytophtora sojae, which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by …
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Virus taxonomy proposal summaries: a searchable and citable resource to disseminate virus taxonomy advances
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