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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… Meeting.  A wide array of invited speakers shared how research infrastructure – DNA sequencing, synthesis, … sharing the journeys of their research careers, and showcasing the broad applications of their genomics and … when she’d heard Hungate speak years ago, he’d described how microbial communities interact “almost like poetry.” …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… can thrive in changing conditions. A recent study shows that when salinity is reduced in its environment, this … changing environmental conditions, researchers can explore how to better manage the growth, yield and climate … biofuel. Summary Water temperatures and salinity determine how life thrives in the Arctic, and how different types of …
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Methane Makers in Yosemite’s Lakes
… lakes are isolated, but varied. They’re a great way to see how climate change affects freshwater ecosystems, and how those ecosystems work. …
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… the plant and illuminates the significant role sex plays in how the moss grows, stores carbon and responds to stress. … 5% of annual greenhouse gas emissions. Understanding how sphagnum, a primary component of peatlands, processes  … sequestration. Researchers wanted to better understand how sphagnum adapts to these varying topographies which …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… who discussed her work on transposable elements and how understanding these genes has helped pave the way for … her keynote. In 2012, Doudna published results indicating how CRISPR Cas-9 could be used as a DNA cleaver and gene … range of new questions — from basic research, like learning how to optimize the gene editing function of CRISPR-Cas9, to …
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An Integrated Dataset to Understand Ecosystem Interaction
… microbial partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  outlined in  … this massive and integrated data set will help identify how different elements of the ecosystem interact and respond … of Energy operated under Contract No. DE-AC02-05CH11231. The work conducted by the National Microbiome Data …
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Gotta Catch 'Em Gall
… galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find …
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Mapping the Earth’s Hidden Fungal Kingdom
… Microbiology of nearly 2,000 of these genomes reveals just how much we still have to discover about Earth's fungal … facing scientists is both logistical and analytical. How can the research community systematically sample an … called it “a call to action for many communities” including educational partners, citizen scientists and the fungal …
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Doubling Down on Known Protein Families
… to see beyond the beam — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … organisms, but we still aren’t sure of their function.  However, if a gene in the community doesn’t match any of the …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … and integration with single-cell RNA sequencing reveals how transcription factors control gene expression and cell … single-cell gene expression maps, providing insight into how regulatory pathways control specific cell types. “A lot …
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