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Gotta Catch 'Em Gall
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
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Busting the Unbreakable Lignin
… Research of the U.S. Department of Energy grant DE-SC0020420 (MAO), Institute for Collaborative Biotechnologies grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research Office contract W911NF-19-1-0010 … Institute (JBEI, http://www.jbei.org) contract DE-AC02–05CH11231 (Lawrence Berkeley National Laboratory), and the …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… precise gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an … biomaterial manufacturing.  Summary Auxenochlorella UTEX 250-A provides an unprecedented foundation for metabolic … and Environmental Research program under award no. DE-SC0023027 (to SSM and JLM) with support from the Gordon and …
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DAP-seq Drives Robust Mapping of Gene Regulation
… a vast resource: nearly 3,000 genome-wide binding maps for 360 transcription factors across 10 plant species, … Complementing this, researchers have profiled over 160,000 high-quality single-nuclei transcriptomes, enabling …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… not covered by reference genomes.”  Most of the more than 600 billion base pairs (Gigabases or Gbp) of genetic data … conducted by JGI users. These datasets include an extensive 25-year study of microbial communities in freshwater … data used to train GenomeOcean encompasses approximately 645.4 Gbp of high-quality contigs from diverse sources, …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of …
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The Expanding Universe of Methane Metabolisms in Archaea
… into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the … and for the JGI Annual Meeting closes on March 11, 2019. Novel Yellowstone archaeon belongs to Korarchaeota …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me … it’s great to see how far the field has come from the early 2000s. Josue Duque : One of the best parts about interning …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … Serrano et al. 2024.  Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting … Department of Energy (DOE) colleagues. “At that time (1986) 98% of the human genome was thought to be junk DNA, so … — before stepping into his role as program manager in 2006 when the JGI transitioned from human to microbial …
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Gut Fungi: Unexpected Source of Novel Chemicals
… californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. … Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also supported by a National Science …
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