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Gotta Catch 'Em Gall
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
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Busting the Unbreakable Lignin
… (MAO), Institute for Collaborative Biotechnologies grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research … (MAO), National Science Foundation grant MCB-1553721 (MAO), Office of Biological and Environmental Research … Institute (JBEI, http://www.jbei.org) contract DE-AC02–05CH11231 (Lawrence Berkeley National Laboratory), and the …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… production. Also notable, researchers found it is missing 33 genes thought essential for photosynthesis, yet still … is remarkably simple with only 7,500 genes, compared to 17,000 in the model alga Chlamydomonas . The genome is also … and Environmental Research program under award no. DE-SC0023027 (to SSM and JLM) with support from the Gordon and Betty …
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DAP-seq Drives Robust Mapping of Gene Regulation
… falling. As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — … have propelled the creation of a vast resource: nearly 3,000 genome-wide binding maps for 360 transcription factors across 10 plant species, …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… machines. You’d go find the cash converter box, feed it a $1, $5 or $10 bill and receive a set amount of tokens, commensurate in … increased efficiency, the model can process these tokens 150 times faster.  Leveraging Large Data Sets for Smarter AI …
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Annual Genomics of Energy & Environment Meeting
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The Expanding Universe of Methane Metabolisms in Archaea
… metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated … the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an … alkane oxidation metabolisms. They also identified a set of 38 marker genes that serve as a core set of genes present in …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the Department of Energy (DOE) colleagues. “At that time (1986) 98% of the human genome was thought to be junk DNA, so … Health that this effort would prove invaluable. By the mid-1990s, the sequencing efforts expanded beyond LANL to … are numbers out there, Drell noted, including the figure 30-million fold: How much JGI’s productivity has increased …
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Gut Fungi: Unexpected Source of Novel Chemicals
… californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department … Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also …
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