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Effects of Polar Light Cycle on Microbial Food Web
… cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A … population spiked to 83%, only to dramatically fall to 1% in early spring and rebound by the late spring. … work was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … 1. Swift CL, Louie KB, Bowen BP, Olson HM, Purvine SO, …
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JGIota: Looking Back at Methane-Making Microbes
… bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those …
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Gotta Catch 'Em Gall
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
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Busting the Unbreakable Lignin
… (MAO), Institute for Collaborative Biotechnologies grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research Office …
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DAP-seq Drives Robust Mapping of Gene Regulation
… falling. As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — … bioenergy and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, first …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… machines. You’d go find the cash converter box, feed it a $1, $5 or $10 bill and receive a set amount of tokens, commensurate in … from large metagenome projects — ultimately assembling over 220 Tb of sequences and obtaining 700 Gb of assemblies. The …
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Annual Genomics of Energy & Environment Meeting
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The Expanding Universe of Methane Metabolisms in Archaea
… metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new … Marker genes for diverse methane metabolisms Of the 10 MAGs reconstructed in the study, five were from …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized …
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