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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … and elevated concentrations of atmospheric carbon dioxide. Summary Sphagnum (peat moss) is an unassuming plant, but it … draft genome for  S. fallax is already available on the  JGI plant portal Phytozome , and the S. magellanicum genome …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … revealed through their diverse genomic capabilities. Summary In a project supported by the JGI Community Science Program, University of California (UC) …
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Understanding Wildfire Recovery, Starting in Soil
… into how to model and track the forest recovery process.  Summary Most studies on post-wildfire soil microbiomes have … a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
Learn more
Gut Fungi: Unexpected Source of Novel Chemicals
… source of novel compounds to help bolster the bioeconomy. Summary A team led by Michelle O’Malley, a chemical engineer … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … yields for other crops under water-limited conditions. Summary In humans, traits such as height or susceptibility …
Learn more
The fungus that made itself at home
… habitat, adapting to thrive in built environments. Summary Unlike white rots, brown rots break down only the … Serpula species, S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. lacrymans …
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An Addiction Crucial to a Fungus’ Reproduction
… on these potential large-scale biodiesel producing fungi. Summary In heritable mutualisms, hosts pass on beneficial … and experimented with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… gases (e.g., carbon dioxide, methane, and nitrous oxide). Summary To do this work, the international scientific team … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale … and advance their utility across the bioeconomy. Summary Wastewater treatment involves removing the organic …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … factors or regulatory proteins that control transcription. Summary Transcription in eukaryotes is handled by three …
Learn more
Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and … crops being considered for bioenergy feedstock development. Summary With the aim of producing at least one reference … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like …
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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … fungi play an integral role in soil carbon storage. Summary There are three types of fungal saprotrophs in the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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