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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  https://doi.org/10.46936/10.25585/60007554 ) conducted by the U.S. …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… system to study virus-host interactions. Approximately 150 archaeal viruses had been previously identified. The JGI … , information the Probst lab used to search for and find 13 additional predicted viral  genomes . The team dubbed … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They …
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Ancient Algae Reveal Secrets of Plant Evolution
… the US National Science Foundation (NSF) CAREER award (DBI-1652164, 1933521), the Nebraska Tobacco Settlement Biomedical …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and functionally explore viral genetic diversity.  In 2021, he was among those selected by the DOE Office of Science …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… Synthesis Science Head] Yasuo [Yoshikuni] gave back in 2016.” Alper’s first approved JGI proposal came through the … development and its applications. “I moved to UC Davis in 2014,” recalled Philipp Zerbe of the University of California, … scale the request size, being permitted to request up to 1.5 megabases (MB) of a synthesis, compared to 0.5 MB for a …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… as well as efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that … researchers put together what they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project …
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Introducing New Members of the JGI User Executive Committee
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JGI@25: Solving the Mystery of the Missing Oil
… described the early efforts in his keynote talk at JGI’s 2011 Annual Genomics of Energy & Environment Meeting: “What we …
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Busting the Unbreakable Lignin
… oxygen and make use of it, it would change the entire landscape of biomass production and bioproduct engineering. … (MAO), Institute for Collaborative Biotechnologies grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research …
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The Expanding Universe of Methane Metabolisms in Archaea
… metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new … Marker genes for diverse methane metabolisms Of the 10 MAGs reconstructed in the study, five were from …
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A Natural Mechanism Can Turbocharge Viral Evolution
… U.S. Department of Energy under contract no. DE-AC02-05CH11231. This research used resources of the National Energy …
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Silver age of GOLD introduces new features
… environmental samples with canonical names.  Since its 1997 launch, active GOLD users have spurred its growth and … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported … of the U.S. Department of Energy operated [DE-AC02-05CH11231]; National Energy Research Scientific Computing …
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