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Doubling Down on Known Protein Families
… how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … Center  Alexander Fleming. “This was a massive analysis of 1.3 billion proteins with massively parallel computations.”  …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Environmental Genomics Group
… into DNA by active microbial populations (Hungate et al. 2015). With the development of high-throughput SIP (Nuccio et … strategies across environmental microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, T., Varghese, N., Roux, S. et …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team set out to characterize the … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to …
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Natural Prodcast Episode 22: Alison Narayan
… I always use it as the first word in the title of my talk, 100% fair for you to make that association. DAN UDWARY: So I … But then, imagine though– OK, my group– I brought in like a 10-pound thing of candy corn. I like put it in a candy dish … up and bring in fruit and things like that in between the 10 pounds bags of candy corn. JACKIE WINTER: Do you think we …
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Frequently Asked Questions: Proposal Submission
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Single Cell Research Group
… Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… it re-enters the environment. Urine accounts for just 1% of wastewater, but it contains most of the nitrogen and … a kilogram of high quality HAp from osteoyeasts would cost $19 to make, and it could be sold in the United States for $50-200, generating a potential profit of $1.4 million annually.  The team is working on developing new …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. … analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq enables …
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Cataloging the Microbes that Manage the Health of River Systems
… the microbiology of watershed systems, they utilized over 160 river water samples collected through WHONDRS, a … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing … (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support by US National Science Foundation …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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