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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … a partial sequence of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published … specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The …
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Industry Engagement Program
… like the JGI, through its Genesis Mission. Launched in 2025, the initiative aims to accelerate scientific discovery, …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Fungal & Algal Program
… biocontrol agents dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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First Monoploid Reference Sequence of Sugarcane
… modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly complex given its estimated size of 10 billion bases (more than three times the size of the … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … when we mapped the first sequenced RNA from the soil, only 10% of them were mapping to the fungal genomes at the JGI,” … tropics.”  Francis Martin will be a keynote speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Environmental Genomics Group
… With the development of high-throughput SIP (Nuccio et al. 2022) and terabase-scale metagenome combined assemblies (Hofmeyr et al. 2020) we are able to quantify isotope incorporation across a … genomes and other genomic elements (Vyshenska et al. 2023). … microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, T., Varghese, N., Roux, S. …
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Frequently Asked Questions: Proposal Submission
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Picking Up Threads of Cotton Genomics
… out of the green pods in every direction. There are 100 million families around the world whose livelihoods … lineages. Senior authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and Jeremy … these things take not five or eight years, but sometimes 10 or 15 years, because the technology develops over time.” …
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Single Cell Research Group
… through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). … Ivanova N. N., Woyke T ., Klenk H. P., Kyrpides N. C. 1,003 reference genomes of bacterial and archaeal isolates …
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