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How to Target a Microbial Needle within a Community Haystack
… The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … their sequences with their roles within their environments. Summary The traditional shotgun metagenomics approach to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing … Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that thrives in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Community Resource for Secondary Metabolite Researchers
… time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available … is a means of expediting BGC and biosynthesis research.  Summary Over the years several secondary metabolites … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Cultivating Symbiotic Antarctic Microbes
… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … the factors controlling microbial symbiotic relationships. Summary Symbiotic relationships are long-term biological …
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Defining a Pan-Genome for Antarctic Archaea
… hypersaline Antarctic lakes. The Impact By collecting and sequencing dominant haloarchaeal sequences from six … possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme cold, high levels of … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his …
Learn more
Massie S. Ballon
… S. Ballon is the Communications and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, … the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help … narratives for diverse audiences. In her prior role as a JGI communications specialist, she served as the primary …
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Marine Microbe Contains Multitudes
… fix carbon, SAR324 is able to influence this carbon pool. Summary To study the lifestyles of SAR324, lead author … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other … of cost-effective environmental cleanup strategies. Summary In New Mexico, the city of Española, the Santa Clara … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of … how microbes control useful chemistry in other organisms.  Summary Most Streptomyces species can produce roughly 30 … salt triggers this metabolic shift, the team combined RNA sequencing across multiple time points with Cappable-seq, a …
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First Monoploid Reference Sequence of Sugarcane
… and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in … developing sugarcane as a sustainable bioenergy feedstocks. Summary Sugarcane is a cultivated crop that very efficiently …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … lacked access to high-quality mitochondrial annotations. Summary Mitochondrial genomes carry the genes responsible …
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A One-Stop Shop for Analyzing Algal Genomes
… which organisms, when are they expressed, and what they do. Summary The name PhycoCosm stems from the Greek phykos, … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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