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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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Project Management Office
… The JGI Project Management Office carries out a number of … to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and … approved proposal – including the submission of samples for sequencing, or the submission of sequencing data for …
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Natural Prodcast Episode 7: Ben Shen
… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to work on sequencing, synthesis and genome mining technology to help … to the Primer episodes, then you heard me talk about JGI’s Earth Secondary Metabolome initiative, and our …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … insights that could benefit candidate biofuel crops. Summary On the TV show “Antiques Roadshow,” the guests are … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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Soil virus offers insight into maintaining microorganisms
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The protein itself could actually help promote soil health. Summary Soil viruses are a reservoir of genetic diversity … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis …
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Plant Program User Advisory Committee
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Fungal & Algal Program User Advisory Committee
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FICUS Overview
… A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides …
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Prokaryote Program User Advisory Committee
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Axel Visel
… and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … developed and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory … University of California, Merced. Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities … me to think outside of simply looking for jobs/postdocs in industry or academia. It was also a great …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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