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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function … This work was supported by the Department of Energy (DOE) Office of Biological and Environmental …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … about environmental samples starts with researchers first sequencing the complex community and then separating out the …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing … Having these datasets will assist researchers in moving toward functional genomics studies to learn more about the …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for … Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, … Science Program award 339, lead Peter Girguis) for sequencing several of the samples. …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has … KBase is a critical partner in enabling systems biology analyses, such as metabolic …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a … this data for researchers worldwide. As the JGI scales toward 10,000 annotated genomes, this infrastructure advantage … (BER) missions. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Habitat‐adapted microbial communities mediate Sphagnum peatmoss resilience to warming
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Microbial responses to long-term warming differ across soil microenvironments
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program awards graduate students the opportunity to pursue part of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Brachypodium: 20 years as a grass biology model system; the way forward?
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in a microbial mat. … Cone Pool in Mono County, California, scientists have used sequencing methods for the first time to comprehensively … more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, postdoctoral …
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