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… Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen BP, Sundaresan … maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani H, de … Education …
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… and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific Computing at … platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United … Systems Biology Knowledgebase. Nature Biotechnology 36, 566–569 (2018). Sneddon, MW, Pontius, W, and Emonet, T. …
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… RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity and … long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses the quality … Education …
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… the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he … deconstruction by anaerobic fungi. Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in … of polar phytoplankton. Nature Ecol Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal …
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… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of … and applications. This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also … Education …
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… active, membrane-bound organelles. Science 376,1453-1458 Nuccio et al 2022 . HT-SIP: a semi-automated stable … to unicellular marine predators. PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active … Education …
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… dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of mobile … virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic … metagenome-assembled viral genomes. Nature Biotechnol . 39(5):578-585. Nayfach S, et al. (2021) A genomic catalog of …
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… reverse genetics to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. … research career at Brookhaven National Laboratory (2015) where she co-founded and led the Quantitative Plant … Peter-Boyer Postdoctoral Award for Research Excellence, 2015 34th Annual Women’s Recognition Award for Science, 2020 …
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… 11 (1), 1-16 https://doi.org/10.1038/s41467-020-17302-5 Varoquaux, et. al.N. 2019 Transcriptomic analysis of … biotic and metabolic responses. Proc. Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study … Phytologist 222: 1149-1160 https://doi.org/10.1111/nph.15662 Gordon, et. al. 2017 Extensive gene content variation …
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… Sanger Institute and Cambridge University University in 2005, where he studied RNA editing and cancer genetics. Dr. … Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in Ensifer … in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root Bacteria Release …
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