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iPHoP: A Matchmaker for Phages and their Hosts
… prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … environmental viruses are constantly infecting and reprogramming these microbes. A better understanding of … described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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How Maize Makes An Antibiotic Cocktail
… a plethora of antibiotics called zealexins. Even though scientists have identified at least 15 zealexins, they … maize by fending off fungal and microbial infections. Scientists had assumed that maize synthesizes these … of Science User Facility, through its  Community Science Program . And the work is part of a  larger CSP Functional …
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JGI@25: The Little Alga That Could
… by Daniel Rokhsar, head of the JGI’s Computational Biology Program, along with JGI Computational Scientist Simon Prochnik, Arthur Grossman of the Carnegie … of UCLA. Merchant is now at UC Berkeley and also a faculty scientist in the Berkeley Lab Biosciences Area. Merchant’s …
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Pinning Down a Piece of Photosynthesis
… often hiding their function from even the most determined scientist.  Recent work in  Nature Communications takes on … the first author of this paper. Grosjean is a research scientist at the U.S. Department of Energy (DOE) Joint … led by Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI …
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Plant Microbial Interactions Group
… (Tokyo University) Dongfong Wang (Spelman University, VFP Program) Emerald Nash (UC Merced Intern) Tyrome Sweet (UC …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more targeted … to microbial host cells. In a separate article, research scientist Simon Roux, a member of Eloe-Fadrosh’s … of the Laboratory-Directed Research and Development (LDRD) Program at Lawrence Berkeley National Laboratory (Berkeley …
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JGI Advisory Committees Code of Conduct
… trust of our stakeholders. These stakeholders range from scientists to members of the public whose tax dollars … of Genomic Technologies Axel Visel, Deputy for Science Programs Tanja Woyke, Deputy of User Programs …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… valuable because in this time that I’ve been in my PhD program, I’ve been really focused with academia. And so this … most exciting thing I learned at JGI is how to work with a scientist and, uh, how to, um, make a scientific research … but JGI truly invested in me to help me become a better scientist. I think this internship will make me much …
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Green Algae Reveal One mRNA Encodes Many Proteins
… was really happening,” recalled Sean Gallaher, a research scientist in Sabeeha Merchant’s lab and first author of the article. The research team included scientists at the University of California (UC), Berkeley, …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 … leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus and … DOE Office of Science as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven …
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A One-Stop Shop for Analyzing Algal Genomes
… of its kind, with an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 … and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan Kuo at the U.S. Department of Energy (DOE) …
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Waiting to Respire
… the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. Department of Energy … (JGI), a DOE Office of Science User Facility, and research scientist Frederik Schulz in Woyke’s Single Cells group had …
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