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Introducing New Members of the JGI User Executive Committee
… He aims to be an advocate helping both the scientific and education communities access and build on the JGI’s …
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DAP-seq Drives Robust Mapping of Gene Regulation
… advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like … binding maps for 360 transcription factors across 10 plant species, illuminating thousands of regulatory …
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The More the Merrier: Making the Case for Plant Pan-genomes
… many plants, including agricultural staples and candidate bioenergy feedstock crops, are recent polyploids. Crop … B. stacei and  B. distachyon , a relative of the candidate bioenergy crop switchgrass and a JGI Flagship Plant. All …
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Simon Roux
… ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … Education …
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A More Intuitive Phytozome Interface
… v12 was first deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are … grab genomes based on which version of Phytozome (e.g., 9, 10, 11, 12) they were first released in.  Are any genomes …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… Genomics-enabled analysis of specialized metabolism in bioenergy crops: current progress and challenges , details … collaboration has been incredibly productive; more than 10 papers, including two Nature Plants publications, in five …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Program Large Scale call. This portfolio accelerates bioenergy innovation through genomic discovery across …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… the culmination of the fifth summer of its flagship education program with UC Merced. JGI Director Nigel Mouncey … also facilitates the non-profit science communication and education organization The Biota Project …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… the JGI. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs) have expanded the network …
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Katherine Louie
… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI … natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable mentions were recognized. The 5 UC Merced …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized … of soil microbiomes using BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil …
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