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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program awards graduate students the opportunity to pursue part of their thesis … As a result of the latest call , a total of 70 graduate students from 52 universities were selected to carry out …
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Natural Prodcast Episode 11: Marnix Medema
… because I was bound to do something else. I was a Master’s student at the University of Groningen and then I wrote my … project like six months after I started. Another PhD student, Kai Blin, actually started there with his PhD … clusters. And then they sequenced a really nice and good assembly. They were able to assemble a really high quality …
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Plant Program
… for very large-scale single genomes, based on the JGI assembly tool meraculous. It is now available for both …
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Publication Policy
… data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of …
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Natural Prodcast Episode 15: Katherine Duncan
… but my PhD was an actinobacteria. And I tell all my students this now, but when I started my PhD, I’d never … accessible. I used to do the website. Actually, one of my students, Darren, currently updates it, so I wouldn’t want … The cool thing about genomes is you can, well, if your assembly is good, you can see everything, right? You can see …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… often the things that suffer first when it comes to genome assembly. Some of the common biosynthetic systems – like a … of this stuff. ALISON TAKEMURA: Yeah, and if I were a grad student or an early career scientist looking to get involved …
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Natural Prodcast Episode 20: Brian Bachmann
… and Toxicology at the University of Utah. Jackie was a grad student while I was a postdoc at Brad Moore’s lab , went on … DAN UDWARY: So Brian is a very old friend. We were graduate students together in Craig Townsend’s lab way back in the … use some of your information from those days. As a grad student, I think I use one of your clusters to help close my …
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Environmental Genomics Group
… Our research focuses on the assembly of metagenomic sequence data into microbial … Oliver, T., Varghese, N., Roux, S. et al. Coassembly and binning of a twenty-year metagenomic …
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Natural Prodcast Episode 5: Brad Moore
… think that was the first perhaps the only case of a genome assembly being aided by a chemical entity. Dan: Yeah, we … how many different kinds of projects and how many great students have come out of your lab. And it feels like that’s … come from. How do you generate these things that that your students do? Brad: Yeah. So over the years the group has, I …
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Natural Prodcast Episode 18: A CSP Primer
… There’s a lot of manual work in terms of the annotate, the assembly, the curation, QC, annotation of these data sets. … You can be in any career stage. Now if somebody is a grad student, it’s important to have submitted within the … to GenBank. So the raw data goes to GenBank, as well as the assembly, the annotations, et cetera, depending on the …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the … genome that has been widely adopted. The new genome assembly resolves both haplotypes, meaning it separately … including first author Anneri Lötter, a graduate student in Zander Myburg's lab, aimed to provide an improved …
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Natural Prodcast Episode 6: Marc Chevrette
… to provide a semi-regular forum for postdocs and graduate students through Natural Prodcast, especially those who have … and then it comes from all over the world. And we’re asking students and undergraduate and high school level classrooms … over 270 places now worldwide with a rate of around 10,000 students a year. And that was those numbers were quoted a …
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