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Natural Prodcast Episode 6: Marc Chevrette
… project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also … that’s really popped up at funding agencies and the popular news recently because a lot of soldiers in the Iraq and …
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Special Initiatives & Programs
… JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both eligible for BERSS). Available Resources … offerings, capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the minimum is 100 kb, and for metabolomics, at least 22 samples are …
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Natural Prodcast Episode 12: Nadine Ziemert
… of secondary metabolism. Welcome back. This will be episode 12 of Natural Prodcast. And it’s our conversation with … Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And …
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Natural Prodcast Episode 16: Marcy Balunas
… so there are– I hesitate to make a guess but maybe 50 to 100 different strains and they are in individual tubules.  … in the field, these glacial bacteria grow slow and it’s not 100% clear that we know what their biological activities … on molluscs and their cyanobacterial feeding preferences A 10″ Simple Rules” article on increasing computational skills …
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Genomes OnLine Database (GOLD) v.10: new features and updates
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Natural Prodcast Episode 5: Brad Moore
… pairs. It was not linear, like Streptomyces , but circular. 10% of the genome encoded natural product pathways. Dan: … Brad: Yeah, at that time, that was new, right? Like, my god 10% of the genome makes small molecules that have, you know, …
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Natural Prodcast Episode 11: Marnix Medema
… welcome back to Natural Prodcast, and this will be episode 11. This continues our little sprint on genome mining. In the … tell a quick story. Looking back, the year was probably 2010, 2011, I was a, uh- actually, I’ve got the t-shirt on …
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Natural Prodcast Episode 4: Nancy Keller
… Wisconsin. Like we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should … first started out the natural product community was almost 100% bacterial. Only people working in mycotoxins worked …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… people what that number is. BETSY PARKINSON: So micromolar, 10 to the negative 6th. Nanomolar, 10 to the negative 9th. Picomolar, 10 to the negative 12th. …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … report the identification of active Cas enzymes – dubbed Cas14 – that target ssDNA. In contrast, the seminal Cas9 … while Burstein is now at Tel Aviv University. The Cas14 proteins are ~400–700 amino acids (aa) in size, half that …
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Natural Prodcast Episode 18: A CSP Primer
… genome program. And I’m a scientist here. And have been for 18 years. (LAUGHS) DAN UDWARY: All right. Easy start. What … proposals as well. I’ve been at the JGI for 20 years, and 10 of those years, I’ve been a project manager. MENAKA …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… relative of SOD is P. infestans , responsible for the mid-19th century Irish potato famine.   Shortly before the … University, was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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