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… working directly with specific universities, continuing education programs in the Bay Area, and established programs … understanding of research methodologies within the realm of education. …

… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, … which is then sent to the JGI for genome sequencing, assembly and annotation. …

… Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard … using long-read sequencing. Exact library types and quality of finished product depend on genome. Selected … will be improved based on feasibility and scientific merit Assembly, annotation ( Mycocosm ) 256/404 Fungal …

… : a user science group dedicated to user project design, assembly, and quality control Strain Engineering Group : a research & … workflow management and novel automations for DNA design, assembly and analysis Overview of synthesis products The JGI … provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …

… synthetic biology applications group. The DNA synthesis and assembly group: Our production group operates as user … to provide access to state-of-the-art DNA synthesis and assembly technologies to the broader community.  We focus … We have developed and continue to improve automated assembly pipelines bringing in new technologies, in …

… 1. Pitot, T.M., et al (2024) “ Conservative taxonomy and quality assessment of giant virus genomes with GVClass. ”  … A comprehensive tool for giant virus taxonomy and quality assessment that assigns taxonomy to putative giant …

… Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the plant kingdom to … to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of genes within … for very large-scale single genomes, based on the JGI assembly tool meraculous. It is now available for both …

… & learning. Their coursework focuses on STEM pedagogy, educational theory and promoting diversity, equity, and … centers. Cal Teach offers a minor in Science and Math Education, as well as a unique opportunity to complete a …

… Our research focuses on the assembly of metagenomic sequence data into microbial … Oliver, T., Varghese, N., Roux, S. et al. Coassembly and binning of a twenty-year metagenomic … container includes Metabat2 as the binner, CheckM1 as the quality assessment tool, GTDBtk to determine lineage, as …

… such factors as genome size, polymorphism level, sample quality and availability, etc.   During scientific peer …

… protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting material is one of the greatest … sample QC prior to shipment: Importance of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC …

… provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …